Calculates a functional similarity measure between gene identifiers based on the pathways described on KEGG and REACTOME.
Important functions
pathSim(): Calculates the similarity between two pathways.geneSim(): Calculates the similarity (based on pathSim) between two genes.clusterSim(): Calculates the similarity between two clusters of genes by joining pathways of each gene.clusterGeneSim(): Calculates the similarity between two clusters of genes by comparing the similarity between the genes of a cluster.similarities(): Allows to combine the value of matrices of similarities.conversions(): Two functions to convert similarity measures.weighted(): Functions provided to combine similarities.